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1

Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level

Olivier Harismendy, Vikas Bansal, Gaurav Bhatia, Masakazu Nakano…

Journal:

Year:

2010

Language:

english

File:

PDF, 1.42 MB

english, 2010

2

Deep mining heterogeneous networks of biomedical linked data to predict novel drug–target associations

Zong, Nansu, Kim, Hyeoneui, Ngo, Victoria, Harismendy, Olivier

Journal:

Year:

2017

Language:

english

File:

PDF, 950 KB

english, 2017

3

Detection of low prevalence somatic mutations in solid tumors with ultra-deep targeted sequencing

Olivier Harismendy, Richard B Schwab, Lei Bao, Jeff Olson…

Journal:

Year:

2011

Language:

english

File:

PDF, 352 KB

english, 2011

4

Evaluation of ultra-deep targeted sequencing for personalized breast cancer care

Harismendy, Olivier, Schwab, Richard B, Alakus, Hakan, Yost, Shawn E, Matsui, Hiroko, Hasteh, Farnaz, Wallace, Anne M, Park, Hannah L, Madlensky, Lisa, Parker, Barbara, Carpenter, Philip M, Jepsen, Kr

Journal:

Breast Cancer Research

Year:

2013

Language:

english

File:

PDF, 609 KB

english, 2013

5

Activation of Hedgehog signaling associates with early disease progression in chronic lymphocytic leukemia

Ghia, Emanuela M., Rassenti, Laura Z., Neuberg, Donna S., Blanco, Alejandro, Yousif, Fouad, Smith, Erin N., McPherson, John D., Hudson, Thomas J., Harismendy, Olivier, Frazer, Kelly A., Kipps, Thomas

Journal:

Year:

2019

File:

PDF, 1.32 MB

2019

6

9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response

Song, Xiaoyuan, Rahim, Nazli G., Tanasa, Bogdan, Heintzman, Nathaniel, Ren, Bing, Fu, Xiang-Dong, Topol, Eric J., Rosenfeld, Michael G., Harismendy, Olivier, Notani, Dimple

Journal:

Year:

2011

Language:

english

File:

PDF, 896 KB

english, 2011

7

Prognostic Importance of Age, Tumor Location, and Tumor Grade in Grade II Astrocytomas: An Integrated Analysis of the Cancer Genome Atlas and the Surveillance, Epidemiology, and End Results Database

Alattar, Ali A., Carroll, Kate T., Bryant, Alex K., Hirshman, Brian, Joshi, Rushikesh, Carter, Bob S., Harismendy, Olivier, Chen, Clark C.

Journal:

World Neurosurgery

Year:

2018

Language:

english

File:

PDF, 592 KB

english, 2018

8

HER2-Overexpressing Ductal Carcinoma In Situ Associated with Increased Risk of Ipsilateral Invasive Recurrence, Receptor Discordance with Recurrence

O'Keefe, Thomas J, Blair, Sarah L, Hosseini, Ava, Harismendy, Olivier, Wallace, Anne M

Journal:

Cancer Prevention Research

Year:

2020

File:

PDF, 3.77 MB

2020

9

Integrative genomic analysis of mouse and human hepatocellular carcinoma

Dow, Michelle, Pyke, Rachel M., Tsui, Brian Y., Alexandrov, Ludmil B., Nakagawa, Hayato, Taniguchi, Koji, Seki, Ekihiro, Harismendy, Olivier, Shalapour, Shabnam, Karin, Michael, Carter, Hannah, Font-B

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.38 MB

english, 2018

10

BAP1 mutation is a frequent somatic event in peritoneal malignant mesothelioma

Alakus, Hakan, Yost, Shawn E, Woo, Brian, French, Randall, Lin, Grace Y, Jepsen, Kristen, Frazer, Kelly A, Lowy, Andrew M, Harismendy, Olivier

Journal:

Journal of Translational Medicine

Year:

2015

Language:

english

File:

PDF, 680 KB

english, 2015

11

Homozygous GNAS 393C-Allele Carriers with Locally Advanced Esophageal Cancer Fail to Benefit from Platinum-Based Preoperative Chemoradiotherapy

Alakus, Hakan, Bollschweiler, Elfriede, Hölscher, Arnulf H., Warnecke-Eberz, Ute, Frazer, Kelly A., Harismendy, Olivier, Lowy, Andrew M., Mönig, Stefan P., Eberz, Pascal M., Maus, Martin, Drebber, Uta

Journal:

Annals of Surgical Oncology

Year:

2014

Language:

english

File:

PDF, 275 KB

english, 2014

12

Interaction between the contributions of tumor location, tumor grade, and patient age to the survival benefit associated with gross total resection (GTR)

Carroll, Kate T., Bryant, Alex K., Hirshman, Brian, Alattar, Ali A., Joshi, Rushikesh, Gabel, Brandon, Carter, Bob S., Harismendy, Olivier, Vaida, Florin, Chen, Clark C.

Journal:

World Neurosurgery

Year:

2018

Language:

english

File:

PDF, 1.13 MB

english, 2018

13

Dynamic epigenetic regulation of glioblastoma tumorigenicity through LSD1 modulation of MYC expression

Kozono, David, Li, Jie, Nitta, Masayuki, Sampetrean, Oltea, Gonda, David, Kushwaha, Deepa S., Merzon, Dmitry, Ramakrishnan, Valya, Zhu, Shan, Zhu, Kaya, Matsui, Hiroko, Harismendy, Olivier, Hua, Wei,

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

14

EPIG-02DYNAMIC EPIGENETIC MODULATION OF GLIOBLASTOMA TUMORIGENICITY BY INHIBITION OF LYSINE-SPECIFIC DEMETHYLASE 1 (LSD1)

Kozono, David, Li, Jie, Sampetrean, Oltea, Gonda, David, Kushwaha, Deepa, Merzon, Dmitry, Nitta, Masayuki, Ramakrishnan, Valya, Zhu, Shan, Zhu, Kaya, Matsui, Hiroko, Harismendy, Olivier, Hua, Wei, Mao

Journal:

Year:

2015

Language:

english

File:

PDF, 27 KB

english, 2015

15

Method for improving sequence coverage uniformity of targeted genomic intervals amplified by LR-PCR using Illumina GA sequencing-by-synthesis technology

Harismendy, Olivier, Frazer, Kelly

Journal:

Year:

2009

Language:

english

File:

PDF, 1.05 MB

english, 2009

16

Elucidating the role of 8q24 in colorectal cancer

Harismendy, Olivier, Frazer, Kelly A.

Journal:

Nature Genetics

Year:

2009

Language:

english

File:

PDF, 228 KB

english, 2009

17

Both GLUT-1 and GLUT-14 are Independent Prognostic Factors in Gastric Adenocarcinoma

Berlth, Felix, Mönig, Stefan, Pinther, Berit, Grimminger, Peter, Maus, Martin, Schlösser, Hans, Plum, Patrick, Warnecke-Eberz, Ute, Harismendy, Olivier, Drebber, Uta, Bollschweiler, Elfriede, Hölscher

Journal:

Annals of Surgical Oncology

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

18

SURG-04. SURVIVAL BENEFIT ASSOCIATED WITH GROSS TOTAL RESECTION IN GRADE II ASTROCYTOMAS: AN INTEGRATED ANALYSIS OF THE SEER AND TCGA DATABASE

Alattar, Ali, Carroll, Kate, Bryant, Alex, Hirshman, Brian, Joshi, Rushikesh, Carter, Bob, Harismendy, Olivier, Chen, Clark

Journal:

Year:

2018

Language:

english

File:

PDF, 123 KB

english, 2018

19

Evaluating and sharing global genetic ancestry in biomedical datasets

Harismendy, Olivier, Kim, Jihoon, Xu, Xiaojun, Ohno-Machado, Lucila

Journal:

Journal of the American Medical Informatics Association

Year:

2019

Language:

english

File:

PDF, 328 KB

english, 2019

20

Evaluation of next generation sequencing platforms for population targeted sequencing studies

Olivier Harismendy, Pauline C Ng, Robert L Strausberg, Xiaoyun Wang…

Journal:

Year:

2009

Language:

english

File:

PDF, 4.39 MB

english, 2009

21

Immune DNA signature of T-cell infiltration in breast tumor exomes

Levy, Eric, Marty, Rachel, Gárate Calderón, Valentina, Woo, Brian, Dow, Michelle, Armisen, Ricardo, Carter, Hannah, Harismendy, Olivier

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.12 MB

english, 2016

22

HNRNPK maintains epidermal progenitor function through transcription of proliferation genes and degrading differentiation promoting mRNAs

Li, Jingting, Chen, Yifang, Xu, Xiaojun, Jones, Jackson, Tiwari, Manisha, Ling, Ji, Wang, Ying, Harismendy, Olivier, Sen, George L.

Journal:

Nature Communications

Year:

2019

File:

PDF, 2.07 MB

2019

23

General Repression of RNA Polymerase III Transcription Is Triggered by Protein Phosphatase Type 2A-Mediated Dephosphorylation of Maf1

Danuta Oficjalska-Pham, Olivier Harismendy, Wieslaw J. Smagowicz, Anne Gonzalez de Peredo, Magdalena Boguta, André Sentenac, Olivier Lefebvre

Journal:

Year:

2006

Language:

english

File:

PDF, 497 KB

english, 2006

24

ADAR1-mediated RNA-editing of 3′UTRs in breast cancer

Sagredo, Eduardo A., Blanco, Alejandro, Sagredo, Alfredo I., Pérez, Paola, Sepúlveda-Hermosilla, Gonzalo, Morales, Fernanda, Müller, Bettina, Verdugo, Ricardo, Marcelain, Katherine, Harismendy, Olivie

Journal:

Biological Research

Year:

2018

Language:

english

File:

PDF, 1.68 MB

english, 2018

25

Activation of Hedgehog signaling associates with early disease progression in chronic lymphocytic leukemia

Ghia, Emanuela M., Rassenti, Laura Z., Neuberg, Donna S., Blanco, Alejandro, Yousif, Fouad, Smith, Erin N., McPherson, John D., Hudson, Thomas J., Harismendy, Olivier, Frazer, Kelly A., Kipps, Thomas

Journal:

Year:

2019

Language:

english

File:

PDF, 1.32 MB

english, 2019

26

HNRNPK maintains epidermal progenitor function through transcription of proliferation genes and degrading differentiation promoting mRNAs

Li, Jingting, Chen, Yifang, Xu, Xiaojun, Jones, Jackson, Tiwari, Manisha, Ling, Ji, Wang, Ying, Harismendy, Olivier, Sen, George L.

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 2.07 MB

english, 2019

27

Biochemical, Molecular, and Clinical Characterization of Succinate Dehydrogenase Subunit A Variants of Unknown Significance

Bannon, Amber E, Kent, Jason D, Forquer, Isaac, Town, Ajia, Klug, Lillian R, McCann, Kelly E, Beadling, Carol, Harismendy, Olivier, Sicklick, Jason K, Corless, Christopher L, Shinde, Ujwal, Heinrich,

Journal:

Clinical Cancer Research

Year:

2017

Language:

english

File:

PDF, 15.38 MB

english, 2017

28

Nuclear respiratory factor 1 promotes spheroid survival and mesenchymal transition in mammary epithelial cells

Zhou, Yuanshuai, Xu, Zhongjuan, Quan, Daniel, Zhang, Fan, Zhang, Hai, Xiao, Tongqian, Hou, Shulan, Qiao, Hong, Harismendy, Olivier, Wang, Jean Y. J., Suo, Guangli

Journal:

Year:

2018

Language:

english

File:

PDF, 5.26 MB

english, 2018

29

Erratum: Elucidating the role of 8q24 in colorectal cancer

Harismendy, Olivier, Frazer, Kelly A

Journal:

Nature Genetics

Year:

2009

Language:

english

File:

PDF, 65 KB

english, 2009

30

Genetic determinants of phenotypic diversity in humans

Nazli G Rahim, Olivier Harismendy, Eric J Topol, Kelly A Frazer

Journal:

Year:

2008

Language:

english

File:

PDF, 514 KB

english, 2008

31

As we come to the end of 2011, several members of theGenome BiologyEditorial Board give their views on the state of play in genomics

David Adams,Bonnie Berger,Olivier Harismendy,Curtis Huttenhower…

Journal:

Year:

2011

Language:

english

File:

PDF, 234 KB

english, 2011

32

Exome-wide analysis of bi-allelic alterations identifies a Lynch phenotype in The Cancer Genome Atlas

Buckley, Alexandra R., Ideker, Trey, Carter, Hannah, Harismendy, Olivier, Schork, Nicholas J.

Journal:

Genome Medicine

Year:

2018

Language:

english

File:

PDF, 2.51 MB

english, 2018

33

Deciphering the genetic basis of common diseases by integrated functional annotation of common and rare variants

Olivier Harismendy, Gaurav Bhatia, Nazli G Rahim, Vikas Bansal…

Journal:

Year:

2010

Language:

english

File:

PDF, 129 KB

english, 2010

34

Cronkhite Canada Syndrome: Significant Response to Infliximab and a Possible Clue to Pathogenesis

Boland, Brigid S, Bagi, Preet, Valasek, Mark A, Chang, John T, Bustamante, Ranier, Madlensky, Lisa, Sandborn, William J, Harismendy, Olivier, Gupta, Samir

Journal:

American Journal of Gastroenterology

Year:

2016

Language:

english

File:

PDF, 783 KB

english, 2016

35

Deciphering cellâcell interactions and communication from gene expression

Armingol, Erick, Officer, Adam, Harismendy, Olivier, Lewis, Nathan E.

Journal:

Nature Reviews Genetics

Year:

2020

File:

PDF, 3.02 MB

2020

36

A Covering Method for Detecting Genetic Associations between Rare Variants and Common Phenotypes

Bhatia, Gaurav, Bansal, Vikas, Harismendy, Olivier, Schork, Nicholas J., Topol, Eric J., Frazer, Kelly, Bafna, Vineet, von Mering, Christian

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.66 MB

english, 2010

37

Nrf2 Induces IL-17D to Mediate Tumor and Virus Surveillance

Saddawi-Konefka, Robert, Seelige, Ruth, Gross, Emilie T.E., Levy, Eric, Searles, Stephen C., Washington, Allen, Santosa, Endi K., Liu, Beichen, O’Sullivan, Timothy E., Harismendy, Olivier, Bui, Jack D

Journal:

Year:

2016

Language:

english

File:

PDF, 2.41 MB

english, 2016

38

PinAPL-Py: A comprehensive web-application for the analysis of CRISPR/Cas9 screens

Spahn, Philipp N., Bath, Tyler, Weiss, Ryan J., Kim, Jihoon, Esko, Jeffrey D., Lewis, Nathan E., Harismendy, Olivier

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.59 MB

english, 2017

39

Whole Transcriptome Sequencing Enables Discovery and Analysis of Viruses in Archived Primary Central Nervous System Lymphomas

DeBoever, Christopher, Reid, Erin G., Smith, Erin N., Wang, Xiaoyun, Dumaop, Wilmar, Harismendy, Olivier, Carson, Dennis, Richman, Douglas, Masliah, Eliezer, Frazer, Kelly A., Gao, Shou-Jiang

Journal:

Year:

2013

Language:

english

File:

PDF, 428 KB

english, 2013

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